We provide a number of different linksets useful for different types of network extension:
- MicroRNA-related linksets
- TF-related linksets
- Drug-related linksets
- Pathway-related linksets
Note: Originally, we focused on regulatory interactions but people have been using CyTargetLinker in a lot of different ways, so we decided to rename our RegINs to linksets.
If you are looking for a specific version of a link set, please check our archive. If you are missing a link set for a specific database, species or use case, please contact us and we will try to create the network files.
Do you want to create your own link set? Find our more.
If you have any questions, please contact us.
MicroRNA-related linksets
Database | Interaction Types | Linksets |
miRTarBase | microRNA-target gene | Linksets |
TargetScan | microRNA-target gene | Linksets |
TransmiR | Transcription factor – microRNA interactions | Linksets |
miRBase | primary transcript – miRNA | Linksets |
TF-related linksets
Database | Interaction Types | Linksets |
ENCODE | TF-target interactions | Linksets |
TransmiR | Transcription factor – microRNA interactions | Linksets |
Drug-related linksets
Database | Interaction Types | Linksets |
DrugBank | drug-target interactions | Linksets |
ChEMBL | compound – protein target | Linksets |
Pathway-related linksets
Database | Interaction Types | Linksets |
WikiPathways | gene – pathway associations | Linksets |