miRTarBase linksets
miRTarBase: a database curates experimentally validated microRNA-target interactions.
Hsu SD, Lin FM, Wu WY, Liang C, Huang WC, Chan WL, Tsai WT, Chen GZ, Lee CJ, Chiu CM, Chien CH, Wu MC, Huang CY, Tsou AP, Huang HD.
Nucleic Acids Res. 2011 Jan;39(Database issue):D163-9.
doi: 10.1093/nar/gkq1107
miRTarBase website: http://mirtarbase.mbc.nctu.edu.tw/
miRTarBase license: LICENSE
miRTarBase release 8.0
The database content was downloaded from here. The linksets were created with the linksetCreator v.2.0. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.
| Linkset | Species | Interactions | microRNAs | Target genes | Supported gene identifiers |
|---|---|---|---|---|---|
| mirtarbase_hsa_8.0.xgmml.zip | Homo sapiens (hsa) | 502,652 | 2,595 | 15,038 | NCBI Gene, Ensembl, HGNC |
| mirtarbase_mmu_8.0.xgmml.zip | Mus musculus (mmu) | 49,830 | 958 | 7,233 | NCBI Gene, Ensembl |
miRTarBase release 7.0
The database content was downloaded from here. The linksets were created with the linksetCreator v.2.0. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.
| Linkset | Species | Interactions | microRNAs | Target genes | Supported gene identifiers |
|---|---|---|---|---|---|
| mirtarbase_hsa_7.0.xgmml.zip | Homo sapiens (hsa) | 502,652 | 2,595 | 15,038 | NCBI Gene, Ensembl, HGNC |
| mirtarbase_mmu_7.0.xgmml.zip | Mus musculus (mmu) | 49,830 | 958 | 7,233 | NCBI Gene, Ensembl |
| mirtarbase_rno_7.0.xgmml.zip | Rattus norvegicus (rno) | 632 | 179 | 344 | NCBI Gene, Ensembl |
| mirtarbase_dre_7.0.xgmml.zip | Danio rerio (dre) | 152 | 45 | 107 | NCBI Gene, Ensembl |