CTD: Comparative Toxicogenomics Database

CTDbase website: www.ctdbase.org/

The Comparative Toxicogenomics Database: update 2021.
Davis AP, Grondin CJ, Johnson RJ, Sciaky D, Wiegers J, Wiegers TC, Mattingly CJ.
Nucleic Acids Res. 2021 Jan 8;49(D1):D1138-D1143.
doi: 10.1093/nar/gkaa891

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The linkset creation was supported by the funding from the European Union’s Horizon 2020 research and innovation programme under the EJP-RD COFUND-EJP N825575.

CTD data release 6 Jan 2021

The database content was retrieved from the data download page. Don’t forget to first unzip all link set files that you want to use and put them in the same folder.

Linkset CTD version Species Interactions Chemicals Supported chemical identifiers Proteins Supported protein identifiers
CTD_ChemGene_Jan2021.xgmml 2021-01-06 Homo sapiens (hsa) 105,327 9,239 ChEBI, ChEMBL, Wikidata, CAS 10,011 UniProt, NCBI Gene, Ensembl, HGNC