TargetScan linksets

TargetScan: Predicting effective microRNA target sites in mammalian mRNAs.
Agarwal V, Bell GW, Nam JW, Bartel DP.
Elife. 2015 Aug 12;4.
doi: 10.7554/eLife.05005

TargetScan website: http://www.targetscan.org/


TargetScan release 8.0

Linkset Species Interactions microRNAs Target genes Supported gene identifiers
targetscan_hsa_8.0.xgmml.zip Homo sapiens (hsa) 264,563 405 13,077 NCBI Gene, Ensembl, HGNC
targetscan_mmu_8.0.xgmml.zip Mus musculus (mmu) 196,351 1,153 12,997 NCBI Gene, Ensembl

TargetScan release 7.2

The database content was downloaded from here (Conserved site context++ scores only!). The linksets were created with the linksetCreator v.2.0. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.

Linkset Species Interactions microRNAs Target genes Supported gene identifiers
targetscan_hsa_7.2.xgmml.zip Homo sapiens (hsa) 264,563 405 13,077 NCBI Gene, Ensembl, HGNC
targetscan_mmu_7.2.xgmml.zip Mus musculus (mmu) 196,351 1,153 12,997 NCBI Gene, Ensembl