miRBase linksets
The microRNA Registry
S Griffiths‐Jones.
Nucl. Acids Res. (2004) 32 (suppl 1): D109-D111.
doi: 10.1093/nar/gkh023
miRBase website: http://www.mirbase.org/
miRBase release 21
The database content was downloaded from here. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.
| Linkset | Species | Interactions | Primary transcripts | microRNAs |
|---|---|---|---|---|
| mirbase-hsa-v21.xgmml.zip | Homo sapiens (hsa) | 1,881 | 2,813 | 2,813 |
| mirbase-mmu-v21.xgmml.zip | Mus musculus (mmu) | 1,187 | 2,045 | 2,045 |
| mirbase-rno-v21.xgmml.zip | Rattus norvegicus (rno) | 486 | 832 | 832 |