miRBase linksets

The microRNA Registry
S Griffiths‐Jones.
Nucl. Acids Res. (2004) 32 (suppl 1): D109-D111.
doi: 10.1093/nar/gkh023

miRBase website: http://www.mirbase.org/

miRBase release 21

The database content was downloaded from here. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.

Linkset Species Interactions Primary transcripts microRNAs
mirbase-hsa-v21.xgmml.zip Homo sapiens (hsa) 1,881 2,813 2,813
mirbase-mmu-v21.xgmml.zip Mus musculus (mmu) 1,187 2,045 2,045
mirbase-rno-v21.xgmml.zip Rattus norvegicus (rno) 486 832 832