TransmiR linksets
TransmiR: a transcription factor–microRNA regulation database.
Juan Wang, Ming Lu, Chengxiang Qiu and Qinghua Cui.
Nucl. Acids Res. (2010) 38 (suppl 1): D119-D122.
doi: 10.1093/nar/gkp803
TransmiR website: http://www.cuilab.cn/transmir
TransmiR release 1.2
The database content was downloaded from here. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.
Linkset | Species | Interactions | microRNAs | Target genes | Supported gene identifiers |
---|---|---|---|---|---|
TransmiR-hsa-1.2.xgmml.zip | Homo sapiens (hsa) | 403 | 121 | 144 | NCBI Gene, Ensembl, UniProt |
TransmiR-mmu-1.2.xgmml.zip | Mus musculus (mmu) | 28 | 15 | 27 | NCBI Gene, Ensembl, UniProt |