TransmiR linksets

TransmiR v3.0: an updated transcription factor-microRNA regulation database.
Maodi Liang, Chenhao Zhang, Yang Yang, Qinghua Cui, Jun Zhang, Chunmei Cui.
Nucleic Acids Research, Volume 53, Issue D1, 6 January 2025, Pages D318–D323.
doi: 10.1093/nar/gkae1081

TransmiR website: http://www.cuilab.cn/transmir

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TransmiR release 3.0

The database content was downloaded from here. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder. The linksets only includes the literature reviewed interactions.

Linkset	Species	Interactions	microRNAs	Target genes	Supported gene identifiers
TransmiR-hsa-3.0.xgmml.zip	Homo sapiens (hsa)	3622	417	442	HGNC, NCBI Gene, Ensembl, UniProt
TransmiR-mmu-3.0.xgmml.zip	Mus musculus (mmu)	947	224	191	MGI, NCBI Gene, Ensembl, UniProt

TransmiR release 1.2

The database content was downloaded from here. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.

Linkset	Species	Interactions	microRNAs	Target genes	Supported gene identifiers
TransmiR-hsa-1.2.xgmml.zip	Homo sapiens (hsa)	403	121	144	NCBI Gene, Ensembl, UniProt
TransmiR-mmu-1.2.xgmml.zip	Mus musculus (mmu)	28	15	27	NCBI Gene, Ensembl, UniProt