TargetScan linksets
TargetScan: Predicting effective microRNA target sites in mammalian mRNAs.
Agarwal V, Bell GW, Nam JW, Bartel DP.
Elife. 2015 Aug 12;4.
doi: 10.7554/eLife.05005
TargetScan website: http://www.targetscan.org/
TargetScan release 8.0
- The human database content was downloaded from here (Conserved site context++ scores only!).
- The mouse database content was downloaded from here (Conserved site context++ scores only!).
- The linksets were created with the linksetCreator v.2.0. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.
| Linkset | Species | Interactions | microRNAs | Target genes | Supported gene identifiers |
|---|---|---|---|---|---|
| targetscan_hsa_8.0.xgmml.zip | Homo sapiens (hsa) | 264,563 | 405 | 13,077 | NCBI Gene, Ensembl, HGNC |
| targetscan_mmu_8.0.xgmml.zip | Mus musculus (mmu) | 196,351 | 1,153 | 12,997 | NCBI Gene, Ensembl |
TargetScan release 7.2
The database content was downloaded from here (Conserved site context++ scores only!). The linksets were created with the linksetCreator v.2.0. Don’t forget to first unzip all linkset files that you want to use and put them in the same folder.
| Linkset | Species | Interactions | microRNAs | Target genes | Supported gene identifiers |
|---|---|---|---|---|---|
| targetscan_hsa_7.2.xgmml.zip | Homo sapiens (hsa) | 264,563 | 405 | 13,077 | NCBI Gene, Ensembl, HGNC |
| targetscan_mmu_7.2.xgmml.zip | Mus musculus (mmu) | 196,351 | 1,153 | 12,997 | NCBI Gene, Ensembl |