Please cite this publication if you are using CyTargetLinker 4.0.0+ in your research:

CyTargetLinker app update: A flexible solution for network extension in Cytoscape.
Martina Kutmon, Friederike Ehrhart, Egon L Willighagen, Chris T. Evelo, Susan L. Coort
F1000Research 2018, 7:743
doi: 10.12688/f1000research.14613.1

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If you are using an older app version of CyTargetLinker, please cite this publication in your research:

CyTargetLinker: A Cytoscape App to Integrate Regulatory Interactions in Network Analysis.
Martina Kutmon, Thomas Kelder, Pooja Mandaviya, Chris T. Evelo, Susan L. Coort
PLoS One 2013, December 05
doi: 10.1371/journal.pone.0082160